3LC5	Hydrolase Hydrolase Inhibitor	date	Jan 09, 2010
title	Selective Benzothiophine Inhibitors Of Factor Ixa
authors	S.Wang, R.Beck
compound		source
Molecule: Coagulation Factor Ix Chain: A Fragment: Residues 227-461 Synonym: Christmas Factor, Plasma Thromboplastin Component, Ptc, Coagulation Factor Ixa Light Chain, Coagulation Factor Ixa Heavy Chain; Ec: 3.4.21.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F9 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Coagulation Factor Ix Chain: B Fragment: Residues 133-188 Synonym: Christmas Factor, Plasma Thromboplastin Component, Ptc, Coagulation Factor Ixa Light Chain, Coagulation Factor Ixa Heavy Chain; Ec: 3.4.21.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F9 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.120 65.738 93.985 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.62 Å
ligand	CA, IZX	enzyme	Hydrolase E.C.3.4.21.22 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure Based Drug Design: Development of Potent and Selective Factor IXa (FIXa) Inhibitors., Wang S, Beck R, Burd A, Blench T, Marlin F, Ayele T, Buxton S, Dagostin C, Malic M, Joshi R, Barry J, Sajad M, Cheung C, Shaikh S, Chahwala S, Chander C, Baumgartner C, Holthoff HP, Murray E, Blackney M, Giddings A, J Med Chem. 2010 Feb 25;53(4):1473-82. PMID:20121197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3lc5.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3LC5 CSU: Contacts of Structural Units for 3LC5 Structure Factors (379 Kb) Retrieve 3LC5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LC5 from S2C, [Save to disk] Re-refined 3lc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LC5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LC5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LC5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lc5_A] [3lc5] [3lc5_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3LC5: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 3LC5

Community annotation for 3LC5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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