3LG3 Lyase date Jan 19, 2010
title 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia Pes
authors S.S.Sharma, J.S.Brunzelle, T.Skarina, A.Savchenko, W.F.Anderson, For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Isocitrate Lyase
Chain: A, B
Ec: 4.1.3.1
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 632
Strain: Co92
Gene: Acea, Y0016, Ypo3725, Yp_3087
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codonplus(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 2 2 21
R_factor 0.131 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.163 115.133 174.835 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MSE enzyme Lyase E.C.4.1.3.1 BRENDA
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (3lg3.pdb1.gz) 595 Kb
  • LPC: Ligand-Protein Contacts for 3LG3
  • CSU: Contacts of Structural Units for 3LG3
  • Structure Factors (7891 Kb)
  • Retrieve 3LG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LG3 from S2C, [Save to disk]
  • Re-refined 3lg3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LG3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LG3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lg3] [3lg3_A] [3lg3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LG3
  • Community annotation for 3LG3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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