3LGF	Cell Cycle	date	Jan 20, 2010
title	Crystal Structure Of The 53bp1 Tandem Tudor Domain In Comple P53k370me2
authors	S.Roy, T.G.Kutateladze
compound		source
Molecule: Tumor Suppressor P53-Binding Protein 1 Chain: A Fragment: Tandem Tudor Domains (Resiudes 1484-1603) Synonym: P53-Binding Protein 1, P53bp1, 53bp1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tp53bp1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
Molecule: Dimethylated P53 Lysine 370 Peptide Chain: B Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized
symmetry	Space Group: C 1 2 1	R_factor 0.217 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.440 78.100 36.310 90.00 121.92 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	MLY, PGE, SO4	enzyme
Primary reference	Structural insight into p53 recognition by the 53BP1 tandem Tudor domain., Roy S, Musselman CA, Kachirskaia I, Hayashi R, Glass KC, Nix JC, Gozani O, Appella E, Kutateladze TG, J Mol Biol. 2010 May 14;398(4):489-96. Epub 2010 Mar 20. PMID:20307547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (3lgf.pdb1.gz) 47 Kb Biological Unit Coordinates (3lgf.pdb2.gz) 24 Kb LPC: Ligand-Protein Contacts for 3LGF CSU: Contacts of Structural Units for 3LGF Structure Factors (143 Kb) Retrieve 3LGF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LGF from S2C, [Save to disk] Re-refined 3lgf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LGF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LGF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LGF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lgf_A] [3lgf_B] [3lgf] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3LGF

Community annotation for 3LGF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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