3LGI Hydrolase date Jan 20, 2010
title Structure Of The Protease Domain Of Degs (Degs-Deltapdz) At
authors J.Sohn, R.A.Grant, R.T.Sauer
compound source
Molecule: Protease Degs
Chain: A, B, C
Fragment: Protease Domain
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B3235, Degs, Hhob, Htrh, Jw3204
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: X90(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.384 72.762 128.877 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand PO4 enzyme Hydrolase E.C.3.4.21 BRENDA
note 3LGI is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceAllostery is an intrinsic property of the protease domain of DegS: implications for enzyme function and evolution., Sohn J, Grant RA, Sauer RT, J Biol Chem. 2010 Oct 29;285(44):34039-47. Epub 2010 Aug 24. PMID:20739286
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (3lgi.pdb1.gz) 213 Kb
  • LPC: Ligand-Protein Contacts for 3LGI
  • CSU: Contacts of Structural Units for 3LGI
  • Structure Factors (574 Kb)
  • Retrieve 3LGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LGI from S2C, [Save to disk]
  • Re-refined 3lgi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LGI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lgi_C] [3lgi] [3lgi_B] [3lgi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LGI
  • Community annotation for 3LGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science