3LGL Cell Cycle date Jan 20, 2010
title Crystal Structure Of The 53bp1 Tandem Tudor Domain In Comple P53k382me2
authors S.Roy, T.G.Kutateladze
compound source
Molecule: Tumor Suppressor P53-Binding Protein 1
Chain: A
Fragment: Tandem Tudor Domains (Resiudes 1484-1603)
Synonym: P53-Binding Protein 1, P53bp1, 53bp1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tp53bp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Dimethylated P53 Lysine 382 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.430 78.070 36.190 90.00 121.96 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MLY, PGE, SO4 enzyme
Primary referenceStructural insight into p53 recognition by the 53BP1 tandem Tudor domain., Roy S, Musselman CA, Kachirskaia I, Hayashi R, Glass KC, Nix JC, Gozani O, Appella E, Kutateladze TG, J Mol Biol. 2010 May 14;398(4):489-96. Epub 2010 Mar 20. PMID:20307547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3lgl.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3LGL
  • CSU: Contacts of Structural Units for 3LGL
  • Structure Factors (111 Kb)
  • Retrieve 3LGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LGL from S2C, [Save to disk]
  • Re-refined 3lgl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LGL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LGL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lgl_B] [3lgl_A] [3lgl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LGL
  • Community annotation for 3LGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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