3LGR Hydrolase date Jan 21, 2010
title Xylanase II From Trichoderma Reesei Cocrystallized With Tris Dipicolinate Europium
authors G.Pompidor, R.Kahn, O.Maury
compound source
Molecule: Endo-1,4-Beta-Xylanase 2
Chain: A
Synonym: Xylanase 2, 1,4-Beta-D-Xylan Xylanohydrolase 2
Ec: 3.2.1.8
Engineered: Yes
 Organism_scientific: Hypocrea Jecorina
Organism_common: Hypocrea Jecorina
Organism_taxid: 51453
Gene: Xyn2
Expression_system: Trichoderma Longibrachiatum
Expression_system_taxid: 5548
symmetry Space Group: C 1 2 1
R_factor 0.138 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.890 38.370 47.590 90.00 99.83 90.00
method X-Ray Diffractionresolution 1.64 Å
ligand EU, PCA, PDC enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA dipicolinate lanthanide complex for solving protein structures using anomalous diffraction., Pompidor G, Maury O, Vicat J, Kahn R, Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):762-9. Epub 2010, Jun 19. PMID:20606256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3lgr.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3LGR
  • CSU: Contacts of Structural Units for 3LGR
  • Structure Factors (354 Kb)
  • Retrieve 3LGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LGR from S2C, [Save to disk]
  • Re-refined 3lgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LGR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LGR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lgr] [3lgr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LGR
  • Community annotation for 3LGR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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