3LH8 Protein Transport date Jan 21, 2010
title Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
authors B.Collins, D.Shaw, S.Norwood
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 26b
Chain: A, B
Fragment: Unp Residues 7-336
Synonym: Vesicle Protein Sorting 26b
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Vps26b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
symmetry Space Group: P 41 21 2
R_factor 0.261 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.157 118.157 193.815 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • retrograde transport, endoso...

  • Primary referenceAssembly and solution structure of the core retromer protein complex., Norwood SJ, Shaw DJ, Cowieson NP, Owen DJ, Teasdale RD, Collins BM, Traffic. 2010 Sep 28. doi: 10.1111/j.1600-0854.2010.01124.x. PMID:20875039
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3lh8.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3lh8.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 3LH8
  • Structure Factors (512 Kb)
  • Retrieve 3LH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LH8 from S2C, [Save to disk]
  • Re-refined 3lh8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LH8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LH8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lh8_A] [3lh8] [3lh8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LH8
  • Community annotation for 3LH8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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