3LHD Transferase date Jan 22, 2010
title Crystal Structure Of P. Abyssi Trna M1a58 Methyltransferase With S-Adenosyl-L-Homocysteine
authors A.Guelorget, B.Golinelli-Pimpaneau, J.Wouters, C.Barbey
compound source
Molecule: Sam-Dependent Methyltransferase, Putative
Chain: C, A, B, D
Ec: 2.1.1.36
Engineered: Yes
Organism_scientific: Pyrococcus Abyssi
Organism_taxid: 272844
Strain: Ge5
Gene: Pab0283
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30
symmetry Space Group: P 21 21 21
R_factor 0.231 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.030 127.577 151.396 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.59 Å
ligand SAH enzyme Transferase E.C.2.1.1.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceInsights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase., Guelorget A, Roovers M, Guerineau V, Barbey C, Li X, Golinelli-Pimpaneau B, Nucleic Acids Res. 2010 May 18. PMID:20483913
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (3lhd.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3LHD
  • CSU: Contacts of Structural Units for 3LHD
  • Structure Factors (583 Kb)
  • Retrieve 3LHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LHD from S2C, [Save to disk]
  • Re-refined 3lhd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LHD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LHD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lhd_B] [3lhd_A] [3lhd_D] [3lhd_C] [3lhd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LHD
  • Community annotation for 3LHD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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