3LHJ Transferase date Jan 22, 2010
title Crystal Structure Of P38a Mitogen-Activated Protein Kinase I With A Pyrazolopyridinone Inhibitor.
authors C.Mohr, S.Jordan
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.775 86.604 118.959 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.31 Å
ligand LHJ BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and evaluation of 7-alkyl-1,5-bis-aryl-pyrazolopyridinones as highly potent, selective, and orally efficacious inhibitors of p38alpha mitogen-activated protein kinase., Pettus LH, Wurz RP, Xu S, Herberich B, Henkle B, Liu Q, McBride HJ, Mu S, Plant MH, Saris CJ, Sherman L, Wong LM, Chmait S, Lee MR, Mohr C, Hsieh F, Tasker AS, J Med Chem. 2010 Apr 8;53(7):2973-85. PMID:20218619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3lhj.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3LHJ
  • CSU: Contacts of Structural Units for 3LHJ
  • Structure Factors (109 Kb)
  • Retrieve 3LHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LHJ from S2C, [Save to disk]
  • Re-refined 3lhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LHJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LHJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lhj] [3lhj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LHJ: [S_TKc ] by SMART
  • Other resources with information on 3LHJ
  • Community annotation for 3LHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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