3LIM Toxin date Jan 25, 2010
title Crystal Structure Of The Pore Forming Toxin Frac From Sea An Actinia Fragacea
authors A.E.Mechaly, A.Bellomio, K.Morante, J.M.Gonzalez-Manas, D.M.A.Gu
compound source
Molecule: Fragaceatoxin C
Chain: A, B, C, D, E, F
 Organism_scientific: Actinia Fragacea
Organism_common: Sea Anemones
Organism_taxid: 396334
symmetry Space Group: P 63 2 2
R_factor 0.189 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.899 117.899 343.228 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand LDA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • channel activity
  • toxin activity


    • Primary referenceStructural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins., Mechaly AE, Bellomio A, Gil-Carton D, Morante K, Valle M, Gonzalez-Manas JM, Guerin DM, Structure. 2011 Feb 9;19(2):181-91. PMID:21300287
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (3lim.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3lim.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (3lim.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (3lim.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (3lim.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (3lim.pdb6.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3LIM
  • CSU: Contacts of Structural Units for 3LIM
  • Structure Factors (1011 Kb)
  • Retrieve 3LIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LIM from S2C, [Save to disk]
  • Re-refined 3lim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LIM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lim_C] [3lim_E] [3lim_D] [3lim_A] [3lim_F] [3lim] [3lim_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LIM
  • Community annotation for 3LIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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