3LM0 Transferase date Jan 29, 2010
title Crystal Structure Of Human Serinethreonine Kinase 17b (Stk1
authors E.Ugochukwu, M.Soundararajan, P.Rellos, O.Fedorov, C.Phillips, J. E.Hapka, P.Filippakopoulos, A.Chaikuad, A.C.W.Pike, F.Von Delft C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, Struct Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase 17b
Chain: A
Synonym: Dap Kinase-Related Apoptosis-Inducing Protein Kina
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Drak2, Stk17b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 41 2 2
R_factor 0.202 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.540 83.540 115.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand CL, EBD, EDO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3lm0.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3LM0
  • CSU: Contacts of Structural Units for 3LM0
  • Structure Factors (263 Kb)
  • Retrieve 3LM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LM0 from S2C, [Save to disk]
  • Re-refined 3lm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LM0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LM0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lm0_A] [3lm0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LM0: [S_TKc ] by SMART
    • Other resources with information on 3LM0
  • Community annotation for 3LM0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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