3LN2 Hydrolase date Feb 01, 2010
title Crystal Structure Of A Charge Engineered Human Lysozyme Vari
authors A.Gill, T.C.Scanlon, K.E.Griswold
compound source
Molecule: Lysozyme C
Chain: A, B
Synonym: 1,4-Beta-N-Acetylmuramidase C
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyz, Lzm
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Bj5464
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prs416-Gal1
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.421 63.795 111.077 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a charge engineered human lysozyme having enhanced bactericidal activity., Gill A, Scanlon TC, Osipovitch DC, Madden DR, Griswold KE, PLoS One. 2011 Mar 7;6(3):e16788. PMID:21408218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3ln2.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3ln2.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (3ln2.pdb3.gz) 23 Kb
  • CSU: Contacts of Structural Units for 3LN2
  • Structure Factors (176 Kb)
  • Retrieve 3LN2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LN2 from S2C, [Save to disk]
  • Re-refined 3ln2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LN2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LN2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LN2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ln2_A] [3ln2_B] [3ln2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LN2: [LYZ1 ] by SMART
  • Other resources with information on 3LN2
  • Community annotation for 3LN2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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