3LNY	Signaling Protein Signaling Protein	date	Feb 03, 2010
title	Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2 P
authors	J.Zhang, A.Chang, H.Ke, G.N.Phillips Jr., A.L.Lee, Center For Euk Structural Genomics (Cesg)
compound		source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 13 Chain: A Fragment: Pdz2 Domain Synonym: Protein-Tyrosine Phosphatase 1e, Ptp-E1, Hptpe1, P Protein-Tyrosine Phosphatase Ptpl1, Fas-Associated Protein- Phosphatase 1, Fap-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptpn13, Pnp1, Ptp1e, Ptpl1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
Molecule: Rap Guanine Nucleotide Exchange Factor 6 Chain: B Fragment: C-Terminal Residues 1596-1601 Synonym: Pdz Domain-Containing Guanine Nucleotide Exchange Pdz-Gef2, Ra-Gef-2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rapgef6, Pdzgef2
symmetry	Space Group: H 3 2	R_factor 0.163 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.965 73.965 134.056 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.30 Å
ligand	SCN, SO4	enzyme
Primary reference	Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E., Zhang J, Sapienza PJ, Ke H, Chang A, Hengel SR, Wang H, Phillips GN, Lee AL, Biochemistry. 2010 Nov 2;49(43):9280-91. doi: 10.1021/bi101131f. PMID:20839809

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (3lny.pdb1.gz) 349 Kb LPC: Ligand-Protein Contacts for 3LNY CSU: Contacts of Structural Units for 3LNY Structure Factors (235 Kb) Retrieve 3LNY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LNY from S2C, [Save to disk] Re-refined 3lny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LNY in 3D

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Visual 3D analysis of 3LNY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LNY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lny_A] [3lny_B] [3lny] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3LNY: [PDZ ] by SMART

Other resources with information on 3LNY

Community annotation for 3LNY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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