3LQ0 Hydrolase date Feb 08, 2010
title Zymogen Structure Of Crayfish Astacin Metallopeptidase
authors T.Guevara, I.Yiallouros, R.Kappelhoff, S.Bissdorf, W.Stocker, F.X Ruth
compound source
Molecule: Proastacin
Chain: A
Synonym: Crayfish Small Molecule Proteinase
Ec: 3.4.24.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Astacus Astacus
Organism_common: Broad-Fingered Crayfish
Organism_taxid: 6715
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.910 63.370 69.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand GOL, SO4, ZN enzyme Hydrolase E.C.3.4.24.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProenzyme structure and activation of astacin metallopeptidase., Guevara T, Yiallouros I, Kappelhoff R, Bissdorf S, Stoecker W, Gomis-Ruth FX, J Biol Chem. 2010 Mar 4. PMID:20202938
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3lq0.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3LQ0
  • CSU: Contacts of Structural Units for 3LQ0
  • Structure Factors (713 Kb)
  • Retrieve 3LQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LQ0 from S2C, [Save to disk]
  • Re-refined 3lq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LQ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LQ0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lq0_A] [3lq0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LQ0: [ZnMc ] by SMART
  • Other resources with information on 3LQ0
  • Community annotation for 3LQ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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