3LQ8 Transferase date Feb 08, 2010
title Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1
authors J.C.Lougheed, T.J.Stout
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain
Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacgp67
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.925 43.017 89.618 90.00 91.61 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand 88Z BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of tumor cell growth, invasion, and metastasis by EXEL-2880 (XL880, GSK1363089), a novel inhibitor of HGF and VEGF receptor tyrosine kinases., Qian F, Engst S, Yamaguchi K, Yu P, Won KA, Mock L, Lou T, Tan J, Li C, Tam D, Lougheed J, Yakes FM, Bentzien F, Xu W, Zaks T, Wooster R, Greshock J, Joly AH, Cancer Res. 2009 Oct 15;69(20):8009-16. Epub 2009 Oct 6. PMID:19808973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3lq8.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3LQ8
  • CSU: Contacts of Structural Units for 3LQ8
  • Structure Factors (280 Kb)
  • Retrieve 3LQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LQ8 from S2C, [Save to disk]
  • Re-refined 3lq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LQ8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LQ8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lq8_A] [3lq8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LQ8: [TyrKc ] by SMART
  • Other resources with information on 3LQ8
  • Community annotation for 3LQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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