3LVP Transferase date Feb 22, 2010
title Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain Complex With A Bis-Azaindole Inhibitor
authors S.Maignan, J.P.Marquette, J.P.Guilloteau
compound source
Molecule: Insulin-Like Growth Factor 1 Receptor
Chain: A, B, C, D
Fragment: Kinase Domain (2p)
Synonym: Igf1r, Insulin-Like Growth Factor I Receptor, Igf- Receptor, Insulin-Like Growth Factor 1 Receptor Alpha Chain Like Growth Factor 1 Receptor Beta Chain;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf1r
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.226 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.950 94.950 322.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand EPE, PDR, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDesign of potent IGF1-R inhibitors related to bis-azaindoles., Nemecek C, Metz WA, Wentzler S, Ding FX, Venot C, Souaille C, Dagallier A, Maignan S, Guilloteau JP, Bernard F, Henry A, Grapinet S, Lesuisse D, Chem Biol Drug Des. 2010 Aug;76(2):100-6. Epub 2010 Jun 9. PMID:20545947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (3lvp.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (3lvp.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (3lvp.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (3lvp.pdb4.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3LVP
  • CSU: Contacts of Structural Units for 3LVP
  • Structure Factors (232 Kb)
  • Retrieve 3LVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LVP from S2C, [Save to disk]
  • Re-refined 3lvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LVP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lvp_B] [3lvp_A] [3lvp] [3lvp_C] [3lvp_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LVP: [TyrKc ] by SMART
  • Other resources with information on 3LVP
  • Community annotation for 3LVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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