3LWT Hydrolase date Feb 24, 2010
title Crystal Structure Of The Yeast Sac1: Implications For Its Phosphoinositide Phosphatase Function
authors Y.Mao, A.Manford, T.Xia, A.K.Saxena, C.Stefan, F.Hu, S.D.Emr
compound source
Molecule: Phosphoinositide Phosphatase Sac1
Chain: X
Fragment: Cytosolic Portion Of Yeast Sac1
Synonym: Recessive Suppressor Of Secretory Defect
Ec: 3.1.3.-
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Rsd1, Sac1, Ykl212w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petsumo
symmetry Space Group: I 2 2 2
R_factor 0.199 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.158 94.732 155.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand
enzyme Hydrolase E.C.3.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceCrystal structure of the yeast Sac1: implications for its phosphoinositide phosphatase function., Manford A, Xia T, Saxena AK, Stefan C, Hu F, Emr SD, Mao Y, EMBO J. 2010 Apr 13. PMID:20389282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (3lwt.pdb1.gz) 159 Kb
  • Biological Unit Coordinates (3lwt.pdb2.gz) 316 Kb
  • CSU: Contacts of Structural Units for 3LWT
  • Structure Factors (604 Kb)
  • Retrieve 3LWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LWT from S2C, [Save to disk]
  • Re-refined 3lwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LWT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LWT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lwt] [3lwt_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LWT
  • Community annotation for 3LWT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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