3LXB Hydrolase date Feb 25, 2010
title Interconversion Of Human Lysosomal Enzyme Specificities
authors I.B.Tomasic, M.C.Metcalf, A.I.Guce, N.E.Clark, S.C.Garman
compound source
Molecule: Alpha-Galactosidase A
Chain: A, B
Fragment: Unp Residues 32-429
Synonym: Alpha-D-Galactoside Galactohydrolase, Alpha-D-Gala A, Melibiase;
Ec: 3.2.1.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gla
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi-Five
Expression_system_vector_type: Stable Cell Line
Expression_system_plasmid: Pibv5-His-Topo Ta
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.790 106.996 181.598 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand BMA, GOL, MAN, NAG enzyme Hydrolase E.C.3.2.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInterconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases., Tomasic IB, Metcalf MC, Guce AI, Clark NE, Garman SC, J Biol Chem. 2010 Jul 9;285(28):21560-6. Epub 2010 May 5. PMID:20444686
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (3lxb.pdb1.gz) 257 Kb
  • LPC: Ligand-Protein Contacts for 3LXB
  • CSU: Contacts of Structural Units for 3LXB
  • Structure Factors (231 Kb)
  • Retrieve 3LXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LXB from S2C, [Save to disk]
  • Re-refined 3lxb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LXB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LXB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lxb_A] [3lxb] [3lxb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LXB
  • Community annotation for 3LXB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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