3LXO Hydrolase date Feb 25, 2010
title The Crystal Structure Of Ribonuclease A In Complex With Thym Monophosphate
authors N.Doucet, T.B.Jayasundera, M.Simonovic, J.P.Loria
compound source
Molecule: Ribonuclease Pancreatic
Chain: A
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
Other_details: Pancreas
symmetry Space Group: P 32 2 1
R_factor 0.141 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.592 64.592 65.364 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand T3P enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


  • Primary referenceThe crystal structure of ribonuclease A in complex with thymidine-3'-monophosphate provides further insight into ligand binding., Doucet N, Jayasundera TB, Simonovic M, Loria JP, Proteins. 2010 Aug 15;78(11):2459-68. PMID:20602460
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3lxo.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3lxo.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3LXO
  • CSU: Contacts of Structural Units for 3LXO
  • Structure Factors (348 Kb)
  • Retrieve 3LXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LXO from S2C, [Save to disk]
  • Re-refined 3lxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LXO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LXO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lxo_A] [3lxo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LXO: [RNAse_Pc ] by SMART
  • Other resources with information on 3LXO
  • Community annotation for 3LXO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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