3LYM	Hydrolase (O-Glycosyl)	date	Jun 08, 1987
title	Crystal Structure Of Hen Egg-White Lysozyme At A Hydrostatic Of 1000 Atmospheres
authors	C.E.Kundrot, F.M.Richards
compound		source
Molecule: Hen Egg White Lysozyme Chain: A Ec: 3.2.1.17 Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
symmetry	Space Group: P 43 21 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.690 78.690 38.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1LSZ, 2LYM
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres., Kundrot CE, Richards FM, J Mol Biol 1987 Jan 5;193(1):157-70. PMID:3586017

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (3lym.pdb1.gz) 24 Kb CSU: Contacts of Structural Units for 3LYM Likely Quarternary Molecular Structure file(s) for 3LYM Structure Factors (60 Kb) Retrieve 3LYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LYM from S2C, [Save to disk] Re-refined 3lym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LYM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LYM, from MSDmotif at EBI Genome occurence of 3LYM's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3lym__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lym] [3lym_A] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 3LYM: [LYZ1 ] by SMART

Other resources with information on 3LYM

Community annotation for 3LYM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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