3M09 Oxidoreductase Oxidoreductase Inhibitor date Mar 02, 2010
title F98y Tmp-Resistant Dihydrofolate Reductase From Staphylococc With Inhibitor Rab1
authors C.R.Bourne, W.W.Barrow
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Synonym: Dhfr
Ec: 1.5.1.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Fola
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet101d
symmetry Space Group: P 61 2 2
R_factor 0.169 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.180 79.180 107.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.01 Å
ligand GOL, NAP, RAR BindingDB enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of antibiotic-resistant Staphylococcus aureus by the broad-spectrum dihydrofolate reductase inhibitor RAB1., Bourne CR, Barrow EW, Bunce RA, Bourne PC, Berlin KD, Barrow WW, Antimicrob Agents Chemother. 2010 Sep;54(9):3825-33. Epub 2010 Jul 6. PMID:20606069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3m09.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3M09
  • CSU: Contacts of Structural Units for 3M09
  • Structure Factors (170 Kb)
  • Retrieve 3M09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M09 from S2C, [Save to disk]
  • Re-refined 3m09 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M09 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M09
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M09, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m09] [3m09_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3M09
  • Community annotation for 3M09 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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