3M0V Isomerase date Mar 03, 2010
title Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose Isomera S329l In Complex With L-Rhamnose
authors H.Yoshida, K.Takeda, K.Izumori, S.Kamitori
compound source
Molecule: L-Rhamnose Isomerase
Chain: A, B, C, D
Ec: 5.3.1.14
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Stutzeri
Organism_common: Pseudomonas Perfectomarina
Organism_taxid: 316
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.640 104.489 111.622 90.00 106.15 90.00
method X-Ray Diffractionresolution 1.79 Å
ligand MN, RNS enzyme Isomerase E.C.5.3.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceElucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase., Yoshida H, Takeda K, Izumori K, Kamitori S, Protein Eng Des Sel. 2010 Oct 25. PMID:20977999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (3m0v.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 3M0V
  • CSU: Contacts of Structural Units for 3M0V
  • Structure Factors (1078 Kb)
  • Retrieve 3M0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M0V from S2C, [Save to disk]
  • Re-refined 3m0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M0V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m0v_B] [3m0v_A] [3m0v_D] [3m0v_C] [3m0v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3M0V
  • Community annotation for 3M0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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