3M0W Calcium Binding Protein date Mar 03, 2010
title Structure Of S100a4 With Pcp
authors U.A.Ramagopal, N.G.Dulyaninova, S.C.Almo, A.R.Bresnick
compound source
Molecule: Protein S100-A4
Chain: A, B, C, D, E, F, G, H, I, J
Synonym: S100 Calcium-Binding Protein A4, Metastasin, Prote Placental Calcium-Binding Protein, Calvasculin;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Capl, Mts1, S100a4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a
symmetry Space Group: P 1 21 1
R_factor 0.252 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.577 102.275 117.370 90.00 92.60 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA, DIO, P77 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3m0w.pdb1.gz) 146 Kb
  • Biological Unit Coordinates (3m0w.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (3m0w.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (3m0w.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (3m0w.pdb5.gz) 32 Kb
  • Biological Unit Coordinates (3m0w.pdb6.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3M0W
  • CSU: Contacts of Structural Units for 3M0W
  • Structure Factors (487 Kb)
  • Retrieve 3M0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M0W from S2C, [Save to disk]
  • Re-refined 3m0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3M0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3M0W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M0W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m0w_A] [3m0w_J] [3m0w_H] [3m0w_C] [3m0w_B] [3m0w_I] [3m0w_D] [3m0w_F] [3m0w] [3m0w_E] [3m0w_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M0W: [S_100 ] by SMART
    • Other resources with information on 3M0W
  • Community annotation for 3M0W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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