3M11 Transferase Transferase Inhibitor date Mar 03, 2010
title Crystal Structure Of Aurora A Kinase Complexed With Inhibito
authors J.S.Wu, J.S.Leou, M.S.Coumar, H.P.Hsieh, S.Y.Wu
compound source
Molecule: Serinethreonine-Protein Kinase 6
Chain: A
Fragment: Catalytic Domain
Synonym: Aurora Kinase A, Serinethreonine-Protein Kinase A Serinethreonine-Protein Kinase 15, Auroraipl1-Related Kin Aurora-Related Kinase 1, Ark-1, Hark1, Breast Tumor-Amplifi
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 61 2 2
R_factor 0.217 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.266 82.266 170.283 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand AKI BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFast-forwarding hit to lead: aurora and epidermal growth factor receptor kinase inhibitor lead identification., Coumar MS, Chu CY, Lin CW, Shiao HY, Ho YL, Reddy R, Lin WH, Chen CH, Peng YH, Leou JS, Lien TW, Huang CT, Fang MY, Wu SH, Wu JS, Chittimalla SK, Song JS, Hsu JT, Wu SY, Liao CC, Chao YS, Hsieh HP, J Med Chem. 2010 Jul 8;53(13):4980-8. PMID:20550212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3m11.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3M11
  • CSU: Contacts of Structural Units for 3M11
  • Structure Factors (64 Kb)
  • Retrieve 3M11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M11 from S2C, [Save to disk]
  • Re-refined 3m11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3M11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3M11
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M11, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m11_A] [3m11]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3M11: [S_TKc ] by SMART
  • Other resources with information on 3M11
  • Community annotation for 3M11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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