3M93	Translation	date	Mar 19, 2010
title	Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g C
authors	W.Liu, Berkeley Structural Genomics Center (Bsgc)
compound		source
Molecule: Translation Initiation Factor 4e Chain: A Fragment: Unp Residues 49-236 Engineered: Yes		Organism_scientific: Ascaris Suum Organism_common: Pig Roundworm Organism_taxid: 6253 Strain: Pig Roundworm Gene: Ascaris Suum Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
Molecule: Eukaryotic Translation Initiation Factor 4e-Bindi 1; Chain: C Fragment: Unp Residues 51-67 Synonym: Eif4e-Binding Protein 1, 4e-Bp1, Phosphorylated He Acid-Stable Protein Regulated By Insulin 1, Phas-I; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 41	R_factor 0.239 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.620 104.620 47.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	M7G	enzyme
Gene Ontology	Chain Function Process Component A C
Primary reference	Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation., Liu W, Jankowska-Anyszka M, Piecyk K, Dickson L, Wallace A, Niedzwiecka A, Stepinski J, Stolarski R, Darzynkiewicz E, Kieft J, Zhao R, Jones DN, Davis RE, Nucleic Acids Res. 2011 Sep 29. PMID:21965542

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (3m93.pdb1.gz) 32 Kb LPC: Ligand-Protein Contacts for 3M93 CSU: Contacts of Structural Units for 3M93 Structure Factors (90 Kb) Retrieve 3M93 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M93 from S2C, [Save to disk] Re-refined 3m93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M93 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M93

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M93, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m93] [3m93_C] [3m93_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3M93

Community annotation for 3M93 at PDBWiki (http://pdbwiki.org)

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