3M9I Membrane Protein date Mar 22, 2010
title Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids
authors R.K.Hite, Z.Li, T.Walz
compound source
Molecule: Lens Fiber Major Intrinsic Protein
Chain: A
Fragment: Unp Residues 7 To 226
Synonym: Aquaporin-0
 Organism_scientific: Ovis Aries
Organism_common: Domestic Sheep,Lambs,Wild Sheep
Organism_taxid: 9940
symmetry Space Group: P 4 2 2
R_factor 0.250 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.500 65.500 200.000 90.00 90.00 90.00
method Electron Crystallographyresolution 2.50 Å
ligand 3PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePrinciples of membrane protein interactions with annular lipids deduced from aquaporin-0 2D crystals., Hite RK, Li Z, Walz T, EMBO J. 2010 Apr 13. PMID:20389283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3m9i.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 3M9I
  • CSU: Contacts of Structural Units for 3M9I
  • Structure Factors (131 Kb)
  • Retrieve 3M9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3M9I from S2C, [Save to disk]
  • Re-refined 3m9i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3M9I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3M9I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3M9I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3m9i_A] [3m9i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3M9I
  • Community annotation for 3M9I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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