3MAX Hydrolase date Mar 24, 2010
title Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide
authors R.J.Skene, A.J.Jennings
compound source
Molecule: Histone Deacetylase 2
Chain: A, B, C
Synonym: Hd2
Ec: 3.5.1.98
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdac2
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_strain: Sf9
Expression_system_vector_type: Psxb19
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.311 97.227 138.849 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CA, LLX, NA, NHE, ZN BindingDB enzyme Hydrolase E.C.3.5.1.98 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceExploration of the HDAC2 foot pocket: Synthesis and SAR of substituted N-(2-aminophenyl)benzamides., Bressi JC, Jennings AJ, Skene R, Wu Y, Melkus R, Jong RD, O'Connell S, Grimshaw CE, Navre M, Gangloff AR, Bioorg Med Chem Lett. 2010 Mar 30. PMID:20392638
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (3max.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (3max.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (3max.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3MAX
  • CSU: Contacts of Structural Units for 3MAX
  • Structure Factors (1182 Kb)
  • Retrieve 3MAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MAX from S2C, [Save to disk]
  • Re-refined 3max structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MAX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MAX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3max_B] [3max_C] [3max_A] [3max]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MAX
  • Community annotation for 3MAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science