3MEV Transcription date Mar 31, 2010
title Crystal Structure Of Sgf29 In Complex With R2ak4me3
authors C.B.Bian, C.Xu, R.Lam, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.M.E A.Bochkarev, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Saga-Associated Factor 29 Homolog
Chain: A, B
Fragment: Unp Residues 115-293
Synonym: Coiled-Coil Domain-Containing Protein 101
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccdc101, Sgf29
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl

Molecule: Histone H3
Chain: C, D
Fragment: Unp Residues 2-9
Synonym: R2ak4me3 8mer
Engineered: Yes

Synthetic: Yes
Organism_scientific: Xenopus Laevis
Organism_common: Clawed Frog,Common Platanna,Platanna
Organism_taxid: 8355
Other_details: R2ak4me3 8mer
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.966 64.979 104.967 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand GOL, M3L, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation., Bian C, Xu C, Ruan J, Lee KK, Burke TL, Tempel W, Barsyte D, Li J, Wu M, Zhou BO, Fleharty BE, Paulson A, Allali-Hassani A, Zhou JQ, Mer G, Grant PA, Workman JL, Zang J, Min J, EMBO J. 2011 Jun 17. doi: 10.1038/emboj.2011.193. PMID:21685874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3mev.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3MEV
  • CSU: Contacts of Structural Units for 3MEV
  • Structure Factors (436 Kb)
  • Retrieve 3MEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MEV from S2C, [Save to disk]
  • Re-refined 3mev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MEV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mev] [3mev_C] [3mev_B] [3mev_D] [3mev_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MEV
  • Community annotation for 3MEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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