3MGH	Lyase,Transferase Dna	date	Apr 06, 2010
title	Binary Complex Of A Dna Polymerase Lambda Loop Mutant
authors	M.Garcia-Diaz, K.Bebenek, R.Z.Zhou, L.F.Povirk, T.Kunkel
compound		source
Molecule: Dna Polymerase Lambda Chain: A, C Fragment: Loop Mutant Of Dna Polymerase Lambda Synonym: Pol Lambda, Dna Polymerase Kappa, Dna Polymerase B Beta2; Ec: 2.7.7.7, 4.2.99.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Poll Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22
Molecule: Dna (5'-D(Cpgpgpcpapgptpapcptpg)-3') Chain: T, E Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cpapgptpapc)-3') Chain: P, F Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Pgpcpcpg)-3') Chain: D, G Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.209 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 95.998 190.886 58.734 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	NA	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Loop 1 modulates the fidelity of DNA polymerase {lambda}, Bebenek K, Garcia-Diaz M, Zhou RZ, Povirk LF, Kunkel TA, Nucleic Acids Res. 2010 May 7. PMID:20435673

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (3mgh.pdb1.gz) 64 Kb Biological Unit Coordinates (3mgh.pdb2.gz) 63 Kb LPC: Ligand-Protein Contacts for 3MGH CSU: Contacts of Structural Units for 3MGH Structure Factors (312 Kb) Retrieve 3MGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MGH from S2C, [Save to disk] Re-refined 3mgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MGH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MGH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mgh_D] [3mgh] [3mgh_E] [3mgh_A] [3mgh_F] [3mgh_G] [3mgh_T] [3mgh_P] [3mgh_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3MGH: [HhH1] [POLXc ] by SMART

Other resources with information on 3MGH

Community annotation for 3MGH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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