3MGK Structural Genomics, Unknown Function date Apr 06, 2010
title Crystal Structure Of Probable Proteaseamidase From Clostrid Acetobutylicum Atcc 824
authors Y.Patskovsky, R.Toro, J.Freeman, M.Iizuka, J.M.Sauder, S.K.Burley S.C.Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
compound source
Molecule: Intracellular Proteaseamidase Related Enzyme (Th Family);
Chain: A, B
Synonym: Probable Proteaseamidase
Engineered: Yes
 Organism_scientific: Clostridium Acetobutylicum
Organism_taxid: 1488
Gene: Ca_c2826
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.539 70.354 40.195 90.00 101.18 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene CA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3mgk.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 3MGK
  • Structure Factors (1294 Kb)
  • Retrieve 3MGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MGK from S2C, [Save to disk]
  • Re-refined 3mgk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MGK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MGK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mgk] [3mgk_A] [3mgk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MGK
  • Community annotation for 3MGK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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