3MGO	Immune System	date	Apr 07, 2010
title	Crystal Structure Of A H5-Specific Ctl Epitope Derived From Influenza Virus In Complex With Hla-A0201
authors	Y.Sun, J.Liu, M.Yang, F.Gao, J.Zhou, Y.Kitamura
compound		source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain: A, D, G, J Fragment: Extracellular Domain, Unp Residues 25-275 Synonym: Hla-A0201 Heavy Chain, Mhc Class I Antigen A2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A0201 Heavy Chain Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Beta-2-Microglobulin Chain: B, E, H, K Synonym: Beta-2-Microglobulin Form Pi 5.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Beta2 Microglobin Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
Molecule: 10-Meric Peptide From Hemagglutinin Chain: C, F, I, L Synonym: Ri-10 Engineered: Yes		Synthetic: Yes Organism_scientific: Influenza A Virus Organism_taxid: 102793 Other_details: Chemical Synthesized; The Virus Strain Abar Gooseqinghai12005(H5n1) Was Isolated By Depositors But H Been Submitted To Ncbi.
symmetry	Space Group: P 1	R_factor 0.202 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.211 79.322 87.146 90.00 90.00 90.02
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component H, K, E, B cellular response to iron io...
Primary reference	Identification and structural definition of H5-specific CTL epitopes restricted by HLA-A*0201 derived from the H5N1 subtype of influenza A viruses., Sun Y, Liu J, Yang M, Gao F, Zhou J, Kitamura Y, Gao B, Tien P, Shu Y, Iwamoto A, Chen Z, Gao GF, J Gen Virol. 2010 Apr;91(Pt 4):919-30. Epub 2009 Dec 2. PMID:19955560

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk] Biological Unit Coordinates (3mgo.pdb1.gz) 72 Kb Biological Unit Coordinates (3mgo.pdb2.gz) 70 Kb Biological Unit Coordinates (3mgo.pdb3.gz) 70 Kb Biological Unit Coordinates (3mgo.pdb4.gz) 71 Kb CSU: Contacts of Structural Units for 3MGO Structure Factors (899 Kb) Retrieve 3MGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MGO from S2C, [Save to disk] Re-refined 3mgo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MGO in 3D

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Visual 3D analysis of 3MGO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MGO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mgo_B] [3mgo_L] [3mgo_E] [3mgo_H] [3mgo_A] [3mgo_F] [3mgo_K] [3mgo_G] [3mgo] [3mgo_I] [3mgo_J] [3mgo_C] [3mgo_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3MGO: [IGc1 ] by SMART

Other resources with information on 3MGO

Community annotation for 3MGO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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