3MH9 Lipid Binding Protein date Apr 07, 2010
title Crystal Structure Of Lprg Mutant V91w From Mycobacterium Tub
authors H.C.Tsai, J.C.Sacchettini, Tb Structural Genomics Consortium
compound source
Molecule: Lipoprotein Lprg
Chain: C, A
Synonym: 27 Kda Lipoprotein, Antigen P27
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Lpp-27, Lprg, Mt1455, Mtcy21b4.28c, Rv1411c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.726 55.973 96.936 90.00 99.55 90.00
method X-Ray Diffractionresolution 1.79 Å
note 3MH9 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceMycobacterium tuberculosis lipoprotein LprG (Rv1411c) binds triacylated glycolipid agonists of Toll-like receptor 2., Drage MG, Tsai HC, Pecora ND, Cheng TY, Arida AR, Shukla S, Rojas RE, Seshadri C, Moody DB, Boom WH, Sacchettini JC, Harding CV, Nat Struct Mol Biol. 2010 Aug 8. PMID:20694006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3mh9.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3mh9.pdb2.gz) 36 Kb
  • CSU: Contacts of Structural Units for 3MH9
  • Structure Factors (275 Kb)
  • Retrieve 3MH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MH9 from S2C, [Save to disk]
  • Re-refined 3mh9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MH9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MH9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mh9_A] [3mh9] [3mh9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MH9
  • Community annotation for 3MH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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