3MHS	Hydrolase Transcription Regulator Protei	date	Apr 08, 2010
title	Structure Of The Saga Ubp8sgf11sus1sgf73 Dub Module Bound Ubiquitin Aldehyde
authors	N.L.Samara, A.B.Datta, C.E.Berndsen, X.Zhang, T.Yao, R.E.Cohen, C.
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 8 Chain: A Synonym: Ubiquitin Thioesterase 8, Ubiquitin-Specific-Proce Protease 8, Deubiquitinating Enzyme 8; Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Ubp8, Ymr223w, Ym9959.05 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosettta2 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a, Pcdf, Prsf
Molecule: Protein Sus1 Chain: B Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Sus1, Ybr111w-A Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosettta2 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a, Pcdf, Prsf
Molecule: Saga-Associated Factor 11 Chain: C Synonym: 11 Kda Saga-Associated Factor Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Sgf11, Ypl047w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosettta2 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a, Pcdf, Prsf
Molecule: Ubiquitin Chain: D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps27a, Uba52, Ubb, Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosettta2 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a, Pcdf, Prsf
Molecule: Saga-Associated Factor 73 Chain: E Synonym: 73 Kda Saga-Associated Factor, Saga Histone Acetyltransferase Complex 73 Kda Subunit; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast Organism_taxid: 4932 Gene: Sgf73, Ygl066w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosettta2 Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32a, Pcdf, Prsf
symmetry	Space Group: P 21 21 21	R_factor 0.159 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.600 102.084 120.903 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	EDO, GLZ, GOL, ZN	enzyme	Hydrolase E.C.3.1.2.15 BRENDA
Gene Ontology	Chain Function Process Component A B enzyme activator activity C enzyme activator activity E
Primary reference	Structural Insights into the Assembly and Function of the SAGA Deubiquitinating Module., Samara NL, Datta AB, Berndsen CE, Zhang X, Yao T, Cohen RE, Wolberger C, Science. 2010 Apr 15. PMID:20395473

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk] Biological Unit Coordinates (3mhs.pdb1.gz) 309 Kb LPC: Ligand-Protein Contacts for 3MHS CSU: Contacts of Structural Units for 3MHS Structure Factors (574 Kb) Retrieve 3MHS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MHS from S2C, [Save to disk] Re-refined 3mhs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MHS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MHS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MHS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mhs_A] [3mhs_E] [3mhs] [3mhs_D] [3mhs_C] [3mhs_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3MHS: [UBQ] [ZnF_UBP ] by SMART

Other resources with information on 3MHS

Community annotation for 3MHS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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