3MHW Hydrolase date Apr 09, 2010
title The Complex Crystal Structure Of Urokianse And 2-Aminobenzot
authors L.G.Jiang, C.Yuan, L.Q.Chen, M.D.Huang
compound source
Molecule: Urokinase-Type Plasminogen Activator
Chain: U
Fragment: C-Terminal Domain, Unp Residues 179-425
Synonym: U-Plasminogen Activator, Upa, Urokinase-Type Plasm Activator Chain B;
Ec: 3.4.21.73
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
symmetry Space Group: H 3
R_factor 0.205 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.276 121.276 43.136 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.45 Å
ligand ABV, SO4 enzyme Hydrolase E.C.3.4.21.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3mhw.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3MHW
  • CSU: Contacts of Structural Units for 3MHW
  • Structure Factors (639 Kb)
  • Retrieve 3MHW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MHW from S2C, [Save to disk]
  • Re-refined 3mhw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MHW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MHW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MHW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mhw_U] [3mhw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MHW: [Tryp_SPc ] by SMART
  • Other resources with information on 3MHW
  • Community annotation for 3MHW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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