3MIY	Transferase	date	Apr 12, 2010
title	X-Ray Crystal Structure Of Itk Complexed With Sunitinib
authors	A.Kuglstatter, A.G.Villasenor
compound		source
Molecule: Tyrosine-Protein Kinase Itktsk Chain: A, B Fragment: Unp Residues 357-620 Synonym: T-Cell-Specific Kinase, Tyrosine-Protein Kinase Ly Emt; Ec: 2.7.10.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Itk, Emt, Lyk Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 II Sfm Expression_system_vector_type: Virus Expression_system_plasmid: Pvl
symmetry	Space Group: P 1	R_factor 0.207 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.479 52.053 66.106 98.49 103.65 92.84
method	X-Ray Diffraction	resolution	1.67 Å
ligand	B49 BindingDB	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structures of IL-2-inducible T cell Kinase Complexed with Inhibitors: Insights into Rational Drug Design and Activity Regulation., Kutach AK, Villasenor AG, Lam D, Belunis C, Janson C, Lok S, Hong LN, Liu CM, Deval J, Novak TJ, Barnett JW, Chu W, Shaw D, Kuglstatter A, Chem Biol Drug Des. 2010 Jun 9. PMID:20545945

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (3miy.pdb1.gz) 41 Kb Biological Unit Coordinates (3miy.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3MIY CSU: Contacts of Structural Units for 3MIY Structure Factors (371 Kb) Retrieve 3MIY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MIY from S2C, [Save to disk] Re-refined 3miy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MIY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MIY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MIY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3miy_A] [3miy_B] [3miy] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3MIY: [TyrKc ] by SMART

Other resources with information on 3MIY

Community annotation for 3MIY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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