3MJ1 Transferase date Apr 12, 2010
title X-Ray Crystal Structure Of Itk Complexed With Inhibitor Ro51
authors A.Kuglstatter, A.G.Villasenor
compound source
Molecule: Tyrosine-Protein Kinase Itktsk
Chain: A
Fragment: Unp Residues 357-620
Synonym: T-Cell-Specific Kinase, Tyrosine-Protein Kinase Ly Emt;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itk, Emt, Lyk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9 II Sfm
Expression_system_vector_type: Virus
Expression_system_plasmid: Pvl
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.500 39.253 50.584 90.00 93.10 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand 614 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of IL-2-inducible T cell Kinase Complexed with Inhibitors: Insights into Rational Drug Design and Activity Regulation., Kutach AK, Villasenor AG, Lam D, Belunis C, Janson C, Lok S, Hong LN, Liu CM, Deval J, Novak TJ, Barnett JW, Chu W, Shaw D, Kuglstatter A, Chem Biol Drug Des. 2010 Jun 9. PMID:20545945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3mj1.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3MJ1
  • CSU: Contacts of Structural Units for 3MJ1
  • Structure Factors (163 Kb)
  • Retrieve 3MJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MJ1 from S2C, [Save to disk]
  • Re-refined 3mj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MJ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MJ1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mj1] [3mj1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MJ1: [TyrKc ] by SMART
  • Other resources with information on 3MJ1
  • Community annotation for 3MJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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