3MJV Oxidoreductase date Apr 13, 2010
title Structure Of A-Type Ketoreductases From Modular Polyketide S
authors J.Zheng, C.A.Taylor, S.K.Piasecki, A.T.Keatinge-Clay
compound source
Molecule: Amphb
Chain: A, B
Fragment: Ketoreductase Domain
Ec: 1.1.1.100
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptomyces Nodosus
Organism_taxid: 40318
Gene: Amphb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.502 63.691 71.920 72.93 67.21 89.76
method X-Ray Diffractionresolution 1.46 Å
ligand NDP enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Primary referenceStructural and Functional Analysis of A-Type Ketoreductases from the Amphotericin Modular Polyketide Synthase., Zheng J, Taylor CA, Piasecki SK, Keatinge-Clay AT, Structure. 2010 Aug 11;18(8):913-922. PMID:20696392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (3mjv.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (3mjv.pdb2.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 3MJV
  • CSU: Contacts of Structural Units for 3MJV
  • Structure Factors (2286 Kb)
  • Retrieve 3MJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MJV from S2C, [Save to disk]
  • Re-refined 3mjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MJV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MJV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mjv_A] [3mjv] [3mjv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MJV: [PKS_KR ] by SMART
  • Other resources with information on 3MJV
  • Community annotation for 3MJV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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