3MPM Transferase date Apr 27, 2010
title Lck Complexed With A Pyrazolopyrimidine
authors S.W.Cowan-Jacob, G.Rummel
compound source
Molecule: Tyrosine-Protein Kinase Lck
Chain: A
Fragment: Unp Residues 237-501
Synonym: Proto-Oncogene Lck, Lymphocyte Cell-Specific Prote Tyrosine Kinase, P56-Lck, Lsk, T Cell-Specific Protein-Tyro Kinase;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lck
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.073 44.624 120.967 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 5LK, EDO enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew pyrazolo[1,5a]pyrimidines as orally active inhibitors of Lck., Gommermann N, Buehlmayer P, von Matt A, Breitenstein W, Masuya K, Pirard B, Furet P, Cowan-Jacob SW, Weckbecker G, Bioorg Med Chem Lett. 2010 Apr 29. PMID:20483608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3mpm.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3MPM
  • CSU: Contacts of Structural Units for 3MPM
  • Structure Factors (352 Kb)
  • Retrieve 3MPM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MPM from S2C, [Save to disk]
  • Re-refined 3mpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MPM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MPM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MPM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mpm] [3mpm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MPM: [TyrKc ] by SMART
  • Other resources with information on 3MPM
  • Community annotation for 3MPM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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