3MPO Hydrolase date Apr 27, 2010
title The Crystal Structure Of A Hydrolase From Lactobacillus Brev
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Predicted Hydrolase Of The Had Superfamily
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Lactobacillus Brevis
Organism_taxid: 387344
Strain: Atcc 367 Jcm 1170)
Gene: Had, Lvis_0481
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)-Codon+Ril (P)-Stratage
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.254 108.254 130.696 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MSE enzyme
Gene LVIS
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (3mpo.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3mpo.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3mpo.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (3mpo.pdb4.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3MPO
  • CSU: Contacts of Structural Units for 3MPO
  • Structure Factors (305 Kb)
  • Retrieve 3MPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MPO from S2C, [Save to disk]
  • Re-refined 3mpo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MPO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MPO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mpo_B] [3mpo_D] [3mpo_C] [3mpo] [3mpo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MPO
  • Community annotation for 3MPO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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