4V7P Recognition of the amber stop codon by release factor RF1. date
authors Korostelev, A., Zhu, J., Asahara, H., Noller, H.F.
compound source
symmetry
R_factor
R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.62
note 4V7P supersedes 3MR8, 3MRZ, 3MS0, 3MS1
Gene
Ontology
ChainFunctionProcessComponent
AB, DB


AC, DC


AE, DE


AF, DF


AL, DL


AM, DM


AN, DN


AO, DO


AS, DS


AT, DT


B3, C3


B4, C4


BC, CC


BF, CF


BI, CI


BL, CL


BN, CN


BO, CO


BQ, CQ


BS, CS


BW, CW


BX, CX


BY, CY


C1, B1


C2, B2


C5, B5


CD, BD


CE, BE


CG, BG


CH, BH


CJ, BJ


CK, BK


CM, BM


CP, BP


CR, BR


CT, BT


CU, BU


CV, BV


CZ, BZ


DD, AD


DG, AG


DH, AH


DI, AI


DJ, AJ


DK, AK


DP, AP


DQ, AQ


DR, AR


DU, AU


DV, AV


Primary referenceRecognition of the amber UAG stop codon by release factor RF1., Korostelev A, Zhu J, Asahara H, Noller HF, EMBO J. 2010 Aug 4;29(15):2577-85. Epub 2010 Jun 29. PMID:20588254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (985 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7P
  • Structure Factors (5614 Kb)
  • Retrieve 4V7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V7P from S2C, [Save to disk]
    • View 4V7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V7P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7p_B3] [4v7p_DV] [4v7p_AN] [4v7p_BG] [4v7p_CM] [4v7p_CI] [4v7p_DX] [4v7p_BA] [4v7p_DL] [4v7p_DW] [4v7p_BL] [4v7p_DQ] [4v7p_CR] [4v7p_AC] [4v7p_CB] [4v7p_CP] [4v7p_DC] [4v7p_DN] [4v7p_CT] [4v7p_CH] [4v7p_AS] [4v7p_DM] [4v7p_DE] [4v7p_CQ] [4v7p_C1] [4v7p_BN] [4v7p_BI] [4v7p_DI] [4v7p_BR] [4v7p_BQ] [4v7p_B1] [4v7p_AV] [4v7p_AK] [4v7p_DK] [4v7p_CJ] [4v7p_DB] [4v7p_BT] [4v7p_DG] [4v7p_CW] [4v7p_DS] [4v7p_AI] [4v7p_DU] [4v7p_DO] [4v7p_C4] [4v7p_CE] [4v7p_BE] [4v7p_B4] [4v7p_BF] [4v7p_AL] [4v7p_BX] [4v7p_CL] [4v7p_BC] [4v7p_B2] [4v7p_CA] [4v7p_DT] [4v7p_BW] [4v7p_BZ] [4v7p_AP] [4v7p_BY] [4v7p_DD] [4v7p_DJ] [4v7p_CN] [4v7p_CC] [4v7p_CV] [4v7p_CX] [4v7p_AR] [4v7p_CU] [4v7p_CF] [4v7p_AU] [4v7p_AD] [4v7p_CZ] [4v7p_AQ] [4v7p_AH] [4v7p_BP] [4v7p_AW] [4v7p_DP] [4v7p_BU] [4v7p_AA] [4v7p_DH] [4v7p_AB] [4v7p_CO] [4v7p_BV] [4v7p_AF] [4v7p_AX] [4v7p_C2] [4v7p_AG] [4v7p_C5] [4v7p_CK] [4v7p_CG] [4v7p_BB] [4v7p_BS] [4v7p] [4v7p_CY] [4v7p_C3] [4v7p_BM] [4v7p_DF] [4v7p_BO] [4v7p_AM] [4v7p_AO] [4v7p_BJ] [4v7p_CS] [4v7p_B5] [4v7p_DA] [4v7p_BK] [4v7p_BD] [4v7p_DR] [4v7p_AJ] [4v7p_CD] [4v7p_BH] [4v7p_AT] [4v7p_AE]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7P: [KH] [KOW] [PCRF] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4V7P
  • Community annotation for 4V7P at PDBWiki (http://pdbwiki.org)

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