3MSJ Hydrolase Hydrolase Inhibitor date Apr 29, 2010
title Structure Of Bace (Beta Secretase) In Complex With Inhibitor
authors J.Madden, J.Kramer, M.A.Smith, J.Barker, R.Godemann
compound source
Molecule: Beta-Secretase 1
Chain: A, B, C
Fragment: Unp Residues 43-453
Synonym: Bace1, Beta-Site Amyloid Precursor Protein Cleavin 1, Beta-Site App Cleaving Enzyme 1, Membrane-Associated Asp Protease 2, Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
229.196 98.829 63.132 90.00 103.36 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand EV3, GOL BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceFragment-based discovery and optimization of BACE1 inhibitors., Madden J, Dod JR, Godemann R, Kraemer J, Smith M, Biniszkiewicz M, Hallett DJ, Barker J, Dyekjaer JD, Hesterkamp T, Bioorg Med Chem Lett. 2010 Sep 1;20(17):5329-33. Epub 2010 Jun 27. PMID:20656487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (3msj.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (3msj.pdb2.gz) 132 Kb
  • Biological Unit Coordinates (3msj.pdb3.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 3MSJ
  • CSU: Contacts of Structural Units for 3MSJ
  • Structure Factors (959 Kb)
  • Retrieve 3MSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MSJ from S2C, [Save to disk]
  • Re-refined 3msj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MSJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MSJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3msj_C] [3msj_A] [3msj] [3msj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MSJ
  • Community annotation for 3MSJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science