3MSS Transferase Transferase Inhibitor date Apr 29, 2010
title Abl Kinase In Complex With Imatinib And Fragment (Frag2) In Myristate Site
authors S.W.Cowan-Jacob, G.Rummel, G.Fendrich
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A, B, C, D
Fragment: Kinase Domain, Residues 229-515
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, Oncogene C-Abl, P150;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.219 146.780 95.812 90.00 127.07 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand MS7, STI BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBinding or bending: distinction of allosteric Abl kinase agonists from antagonists by an NMR-based conformational assay., Jahnke W, Grotzfeld RM, Pelle X, Strauss A, Fendrich G, Cowan-Jacob SW, Cotesta S, Fabbro D, Furet P, Mestan J, Marzinzik AL, J Am Chem Soc. 2010 May 26;132(20):7043-8. PMID:20450175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (3mss.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3mss.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (3mss.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (3mss.pdb4.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3MSS
  • CSU: Contacts of Structural Units for 3MSS
  • Structure Factors (1381 Kb)
  • Retrieve 3MSS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MSS from S2C, [Save to disk]
  • Re-refined 3mss structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MSS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MSS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MSS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mss_D] [3mss_A] [3mss] [3mss_C] [3mss_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MSS: [TyrKc ] by SMART
  • Other resources with information on 3MSS
  • Community annotation for 3MSS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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