3MTV Hydrolase date Apr 30, 2010
title The Crystal Structure Of The Prrsv Nonstructural Protein Nsp
authors F.Xue, Y.N.Sun, L.M.Yan, C.Zhao, Z.Y.Lou, Z.H.Rao
compound source
Molecule: Papain-Like Cysteine Protease
Chain: A
Fragment: Unp Residues 181-383
Synonym: Nsp1b
Engineered: Yes
Organism_scientific: Porcine Reproductive And Respiratory S Virus;
Organism_common: Prrsv
Organism_taxid: 28344
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 41 21 2
R_factor 0.201 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.895 100.895 81.685 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structure of the PRRSV Nonstructural Protein Nsp1{beta} Reveals a Novel Metal-dependent Nuclease., Xue F, Sun Y, Yan L, Zhao C, Chen J, Bartlam M, Li X, Lou Z, Rao Z, J Virol. 2010 Apr 21. PMID:20410261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3mtv.pdb1.gz) 66 Kb
  • CSU: Contacts of Structural Units for 3MTV
  • Structure Factors (121 Kb)
  • Retrieve 3MTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MTV from S2C, [Save to disk]
  • Re-refined 3mtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MTV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MTV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mtv_A] [3mtv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3MTV
  • Community annotation for 3MTV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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