3MZT Immune System date May 13, 2010
title Protein-Induced Photophysical Changes To The Amyloid Indicat Thioflavin T
authors L.S.Wolfe, M.F.Calabrese, A.Nath, D.V.Blaho, A.D.Miranker, Y.Xion
compound source
Molecule: Beta-2-Microglobulin
Chain: A, B, C, D, E, F
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.239 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.891 116.592 66.317 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CU, TFX enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • cellular response to iron io...

  • Primary referenceProtein-induced photophysical changes to the amyloid indicator dye thioflavin T., Wolfe LS, Calabrese MF, Nath A, Blaho DV, Miranker AD, Xiong Y, Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16863-8. Epub 2010 Sep 8. PMID:20826442
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk]
  • Biological Unit Coordinates (3mzt.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3mzt.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3mzt.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (3mzt.pdb4.gz) 39 Kb
  • Biological Unit Coordinates (3mzt.pdb5.gz) 38 Kb
  • Biological Unit Coordinates (3mzt.pdb6.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3MZT
  • CSU: Contacts of Structural Units for 3MZT
  • Structure Factors (303 Kb)
  • Retrieve 3MZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MZT from S2C, [Save to disk]
  • Re-refined 3mzt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MZT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mzt_C] [3mzt_D] [3mzt_A] [3mzt] [3mzt_E] [3mzt_F] [3mzt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MZT: [IGc1 ] by SMART
  • Other resources with information on 3MZT
  • Community annotation for 3MZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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