3N3L Transferase Transferase Inhibitor date May 20, 2010
title Human Fpps Complex With Fbs_03
authors J.M.Rondeau
compound source
Molecule: Farnesyl Pyrophosphate Synthase
Chain: F
Fragment: Residues 72-419
Synonym: Fpp Synthase, Fps, Farnesyl Diphosphate Synthase, Dimethylallyltranstransferase, Geranyltranstransferase;
Ec: 2.5.1.1, 2.5.1.10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdps, Fps, Kiaa1293
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 Tuner (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.203 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.682 111.682 74.978 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.74 Å
ligand MS0, PO4 BindingDB enzyme Transferase E.C.2.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceAllosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery., Jahnke W, Rondeau JM, Cotesta S, Marzinzik A, Pelle X, Geiser M, Strauss A, Gotte M, Bitsch F, Hemmig R, Henry C, Lehmann S, Glickman JF, Roddy TP, Stout SJ, Green JR, Nat Chem Biol. 2010 Sep;6(9):660-6. Epub 2010 Aug 15. PMID:20711197
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3n3l.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 3N3L
  • CSU: Contacts of Structural Units for 3N3L
  • Structure Factors (120 Kb)
  • Retrieve 3N3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N3L from S2C, [Save to disk]
  • Re-refined 3n3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N3L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N3L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n3l] [3n3l_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3N3L
  • Community annotation for 3N3L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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