5SXW Oxidoreductase date Aug 10, 2016
title Crystal Structure Of The E198a Variant Of Catalase-Peroxidas Burkholderia Pseudomallei
authors P.C.Loewen
compound source
Molecule: Catalase-Peroxidase
Chain: A, B
Synonym: Cp,Peroxidasecatalase
Ec: 1.11.1.21
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei (Strain 1710
Organism_taxid: 320372
Strain: 1710b
Gene: Katg, Burps1710b_3366
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.340 116.020 174.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand HEM, MPD, MRD, NA, OXY, PO4, TOX enzyme Oxidoreductase E.C.1.11.1.21 BRENDA
note 5SXW supersedes 3N3R
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • catalase activity
  • peroxidase activity


  • Primary referenceIsonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases., Wiseman B, Carpena X, Feliz M, Donald LJ, Pons M, Fita I, Loewen PC, J Biol Chem. 2010 Aug 20;285(34):26662-73. Epub 2010 Jun 15. PMID:20554537
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (472 Kb) [Save to disk]
  • Biological Unit Coordinates (5sxw.pdb1.gz) 463 Kb
  • LPC: Ligand-Protein Contacts for 5SXW
  • CSU: Contacts of Structural Units for 5SXW
  • Structure Factors (3716 Kb)
  • Retrieve 5SXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SXW from S2C, [Save to disk]
  • Re-refined 5sxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5SXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5SXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5sxw] [5sxw_B] [5sxw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5SXW
  • Community annotation for 5SXW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science