3N5G Transferase date May 25, 2010
title Crystal Structure Of Histidine-Tagged Human Thymidylate Synt
authors C.Pozzi, D.Cardinale, G.Guaitoli, D.Tondi, R.Luciani, H.Myllykall S.Ferrari, M.P.Costi, S.Mangani
compound source
Molecule: Thymidylate Synthase
Chain: A
Synonym: Tsase, Ts
Ec: 2.1.1.45
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyms, Ts, Oksw-Cl.29
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.166 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.070 96.070 83.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.27 Å
ligand CME, SCH, SO4 enzyme Transferase E.C.2.1.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • thymidylate synthase activit...


    • Primary referenceProtein-protein interface-binding peptides inhibit the cancer therapy target human thymidylate synthase., Cardinale D, Guaitoli G, Tondi D, Luciani R, Henrich S, Salo-Ahen OM, Ferrari S, Marverti G, Guerrieri D, Ligabue A, Frassineti C, Pozzi C, Mangani S, Fessas D, Guerrini R, Ponterini G, Wade RC, Costi MP, Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):E542-9. doi:, 10.1073/pnas.1104829108. Epub 2011 Jul 27. PMID:21795601
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3n5g.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 3N5G
  • CSU: Contacts of Structural Units for 3N5G
  • Structure Factors (300 Kb)
  • Retrieve 3N5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N5G from S2C, [Save to disk]
  • Re-refined 3n5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3N5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3N5G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N5G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n5g_A] [3n5g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3N5G
  • Community annotation for 3N5G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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