3N6K	Transferase Transferase Inhibitor	date	May 26, 2010
title	Human Fpps Complex With Nov_823
authors	J.M.Rondeau
compound		source
Molecule: Farnesyl Pyrophosphate Synthase Chain: F Fragment: Residues 72-419 Synonym: Fpp Synthase, Fps, Farnesyl Diphosphate Synthase, Dimethylallyltranstransferase, Geranyltranstransferase; Ec: 2.5.1.1, 2.5.1.10 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdps, Fps, Kiaa1293 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 Tuner (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 41 21 2	R_factor 0.262 R_Free 0.338
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.123 111.123 76.779 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	BFH, PO4 BindingDB	enzyme	Transferase E.C.2.5.1.1 BRENDA
Gene Ontology	Chain Function Process Component F
Primary reference	Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery., Jahnke W, Rondeau JM, Cotesta S, Marzinzik A, Pelle X, Geiser M, Strauss A, Gotte M, Bitsch F, Hemmig R, Henry C, Lehmann S, Glickman JF, Roddy TP, Stout SJ, Green JR, Nat Chem Biol. 2010 Sep;6(9):660-6. Epub 2010 Aug 15. PMID:20711197

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (3n6k.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 3N6K CSU: Contacts of Structural Units for 3N6K Structure Factors (192 Kb) Retrieve 3N6K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3N6K from S2C, [Save to disk] Re-refined 3n6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3N6K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3N6K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3N6K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3n6k] [3n6k_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3N6K

Community annotation for 3N6K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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