3N84	Protein Binding Peptide	date	May 27, 2010
title	Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 2 Macrocyclic Ligand Having The Sequence Pyvnvp
authors	J.H.Clements, S.F.Martin
compound		source
Molecule: Growth Factor Receptor-Bound Protein 2 Chain: A, B, C, D, E, F Fragment: Sh2 Domain Synonym: Adapter Protein Grb2, Protein Ash, Sh2sh3 Adapter Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Grb2, Ash Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sg13009 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe-60
Molecule: 23-Membered Peptide-Like Macrocyclic Ligand Chain: G, H, I, J, K, L Engineered: Yes Other_details: Pyvnvp-Containing Sequence		Synthetic: Yes
symmetry	Space Group: C 1 2 1	R_factor 0.180 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.223 141.320 62.452 90.00 89.99 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	011, CL, GOL, MG, PTR	enzyme
Primary reference	Thermodynamic and Structural Effects of Macrocyclization as a Constraining Method in Protein-Ligand Interactions., Delorbe JE, Clements JH, Whiddon BB, Martin SF, ACS Med Chem Lett. 2010 Nov 11;1(8):448-452. PMID:21116482

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (3n84.pdb1.gz) 44 Kb Biological Unit Coordinates (3n84.pdb2.gz) 24 Kb Biological Unit Coordinates (3n84.pdb3.gz) 43 Kb Biological Unit Coordinates (3n84.pdb4.gz) 23 Kb Biological Unit Coordinates (3n84.pdb5.gz) 44 Kb Biological Unit Coordinates (3n84.pdb6.gz) 24 Kb Biological Unit Coordinates (3n84.pdb7.gz) 22 Kb Biological Unit Coordinates (3n84.pdb8.gz) 23 Kb Biological Unit Coordinates (3n84.pdb9.gz) 23 Kb LPC: Ligand-Protein Contacts for 3N84 CSU: Contacts of Structural Units for 3N84 Structure Factors (599 Kb) Retrieve 3N84 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3N84 from S2C, [Save to disk] Re-refined 3n84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3N84 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3N84

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3N84, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3n84_H] [3n84_G] [3n84_B] [3n84_J] [3n84_F] [3n84] [3n84_K] [3n84_I] [3n84_D] [3n84_L] [3n84_A] [3n84_E] [3n84_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3N84: [SH2 ] by SMART

Other resources with information on 3N84

Community annotation for 3N84 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---