3N9A Hydrolase date May 28, 2010
title Mite-Y Lysozyme: Vegemite
authors J.Newman, T.S.Peat, D.Lucent
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Other_details: Purchased From Sigma
symmetry Space Group: P 43 21 2
R_factor 0.162 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.289 79.289 37.889 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3n9a.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3N9A
  • CSU: Contacts of Structural Units for 3N9A
  • Structure Factors (332 Kb)
  • Retrieve 3N9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N9A from S2C, [Save to disk]
  • Re-refined 3n9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3N9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3N9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N9A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n9a_A] [3n9a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3N9A: [LYZ1 ] by SMART
  • Other resources with information on 3N9A
  • Community annotation for 3N9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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